diff --git a/src/detection/packages/packages_linux.c b/src/detection/packages/packages_linux.c
index f3ca054f2..3aa0e2b12 100644
--- a/src/detection/packages/packages_linux.c
+++ b/src/detection/packages/packages_linux.c
@@ -467,6 +467,78 @@ static uint32_t getGuixPackages(FFstrbuf* baseDir, const char* dirname)
     return num_elements;
 }
 
+static inline uint32_t getFlatpakRuntimePackagesArch(FFstrbuf* baseDir)
+{
+    FF_AUTO_CLOSE_DIR DIR* dirp = opendir(baseDir->chars);
+    if (dirp == NULL)
+        return 0;
+
+    uint32_t num_elements = 0;
+
+    struct dirent *entry;
+    while ((entry = readdir(dirp)) != NULL)
+    {
+        if(entry->d_type == DT_DIR && entry->d_name[0] != '.')
+        {
+            num_elements += getNumElements(baseDir, entry->d_name, DT_DIR);
+        }
+    }
+
+    return num_elements;
+}
+
+static inline uint32_t getFlatpakRuntimePackages(FFstrbuf* baseDir)
+{
+    ffStrbufAppendS(baseDir, "runtime/");
+    FF_AUTO_CLOSE_DIR DIR* dirp = opendir(baseDir->chars);
+    if (dirp == NULL)
+        return 0;
+
+    uint32_t runtimeDirLength = baseDir->length;
+    uint32_t num_elements = 0;
+
+    struct dirent *entry;
+    while ((entry = readdir(dirp)) != NULL)
+    {
+        if(entry->d_type == DT_DIR && entry->d_name[0] != '.')
+        {
+            // `flatpak list` ignores `.Locale` and `.Debug` packages, and maybe others
+            const char* dot = strrchr(entry->d_name, '.');
+            if (__builtin_expect(!dot, false)) continue;
+            dot++;
+
+            if (ffStrEquals(dot, "Locale") || ffStrEquals(dot, "Debug"))
+                continue;
+
+            ffStrbufAppendS(baseDir, entry->d_name);
+            ffStrbufAppendC(baseDir, '/');
+            num_elements += getFlatpakRuntimePackagesArch(baseDir);
+            ffStrbufSubstrBefore(baseDir, runtimeDirLength);
+        }
+    }
+
+    return num_elements;
+}
+
+static uint32_t getFlatpakPackages(FFstrbuf* baseDir, const char* dirname)
+{
+    uint32_t num_elements = 0;
+    uint32_t baseDirLength = baseDir->length;
+    ffStrbufAppendS(baseDir, dirname);
+    ffStrbufAppendS(baseDir, "/flatpak/");
+    uint32_t flatpakDirLength = baseDir->length;
+
+    ffStrbufAppendS(baseDir, "app");
+    num_elements += getNumElementsImpl(baseDir->chars, DT_DIR);
+    ffStrbufSubstrBefore(baseDir, flatpakDirLength);
+
+    num_elements += getFlatpakRuntimePackages(baseDir);
+
+    ffStrbufSubstrBefore(baseDir, baseDirLength);
+
+    return num_elements;
+}
+
 static void getPackageCounts(FFstrbuf* baseDir, FFPackagesResult* packageCounts, FFPackagesOptions* options)
 {
     if (!(options->disabled & FF_PACKAGES_FLAG_APK_BIT)) packageCounts->apk += getNumStrings(baseDir, "/lib/apk/db/installed", "C:Q", "apk");
@@ -474,7 +546,7 @@ static void getPackageCounts(FFstrbuf* baseDir, FFPackagesResult* packageCounts,
     if (!(options->disabled & FF_PACKAGES_FLAG_LPKG_BIT)) packageCounts->lpkg += getNumStrings(baseDir, "/opt/Loc-OS-LPKG/installed-lpkg/Listinstalled-lpkg.list", "\n", "lpkg");
     if (!(options->disabled & FF_PACKAGES_FLAG_EMERGE_BIT)) packageCounts->emerge += countFilesRecursive(baseDir, "/var/db/pkg", "SIZE");
     if (!(options->disabled & FF_PACKAGES_FLAG_EOPKG_BIT)) packageCounts->eopkg += getNumElements(baseDir, "/var/lib/eopkg/package", DT_DIR);
-    if (!(options->disabled & FF_PACKAGES_FLAG_FLATPAK_BIT)) packageCounts->flatpakSystem += getNumElements(baseDir, "/var/lib/flatpak/app", DT_DIR);
+    if (!(options->disabled & FF_PACKAGES_FLAG_FLATPAK_BIT)) packageCounts->flatpakSystem += getFlatpakPackages(baseDir, "/var/lib");
     if (!(options->disabled & FF_PACKAGES_FLAG_NIX_BIT))
     {
         packageCounts->nixDefault += getNixPackages(baseDir, "/nix/var/nix/profiles/default");
@@ -603,5 +675,5 @@ void ffDetectPackagesImpl(FFPackagesResult* result, FFPackagesOptions* options)
     }
 
     if (!(options->disabled & FF_PACKAGES_FLAG_FLATPAK_BIT))
-        result->flatpakUser = getNumElements(&baseDir, "/.local/share/flatpak/app", DT_DIR);
+        result->flatpakUser = getFlatpakPackages(&baseDir, "/.local/share");
 }